Cohort Analytics
Statistics on any Cohorts saved in i2b2
The DataLENS Application includes Self-Service Cohort Analysis for patient sets created in i2b2, in which frequencies and comparison to overall UAB populations is possible for various data domains, including Demographics, Encounters, Procedures, etc.
The DataLENS Application includes Self-Service Cohort Analysis for patient sets created in i2b2, in which frequencies and comparison to overall UAB populations is possible for various data domains, including Demographics, Encounters, Procedures, etc.
Screening or Chart Abstraction Tools
Phedrs and IMPACT Access
Phedrs: Chart review capability can be provided for population screening for enrollment or cohort inclusion, or for detailed data collection or abstraction for Analysis. IMPACT access for an IRB Protocol allows full, read only access to the EHR.
Click below to request access via email.
Phedrs: Chart review capability can be provided for population screening for enrollment or cohort inclusion, or for detailed data collection or abstraction for Analysis. IMPACT access for an IRB Protocol allows full, read only access to the EHR.
Click below to request access via email.
Data Analysis Consultation
Research Computing and Faculty Assistance
In collaboration with Informatics Faculty and Research Computing, evaluation of analysis tools, methods, and computational resources. Expand this card below for more info and links.
Click below to request a consultation via email.
In collaboration with Informatics Faculty and Research Computing, evaluation of analysis tools, methods, and computational resources. Expand this card below for more info and links.
Click below to request a consultation via email.
Research Data Collection
Prospective studies and ongoing trials
Access to a protected instance of REDCap is available at the link in the dropdown below. Access is restricted to inside the Health System Network.
Click below to request help via email.
Access to a protected instance of REDCap is available at the link in the dropdown below. Access is restricted to inside the Health System Network.
Click below to request help via email.
Source Code Management
Gitlab hosted by Research Computing
We help connect research teams to git-based IT infrastructure, training in modern practices, and tooling for interacting with the extensive git ecosystem.
Click below to login to RC Gitlab.
We help connect research teams to git-based IT infrastructure, training in modern practices, and tooling for interacting with the extensive git ecosystem.
Click below to login to RC Gitlab.
Documentation and Storage
UAB File Share, Box.com and others
Services are available for organizing and sharing documents, such as standard operating procedures (SOP), data management and analysis protocols, reports, grant proposals, manuscripts, and other important files related to R&D processes in a modern research team.
Services are available for organizing and sharing documents, such as standard operating procedures (SOP), data management and analysis protocols, reports, grant proposals, manuscripts, and other important files related to R&D processes in a modern research team.
Re-usable Pipelines
Omics Processing and Demos
Various re-usable data processing pipelines are available for an assortment of purposes.
Click below to request help via email.
Various re-usable data processing pipelines are available for an assortment of purposes.
Click below to request help via email.
Build a UAB Cohort with i2b2
Informatics for Integrating Biology & the Bedside
i2b2 is a self-service 'cohort discovery tool' available to all personnel. It allows you to explore and query clinical data that has been deidentified and aggregated. i2b2 allows you to count patients with specific characteristics and services, as well as to save cohorts.
i2b2 is a self-service 'cohort discovery tool' available to all personnel. It allows you to explore and query clinical data that has been deidentified and aggregated. i2b2 allows you to count patients with specific characteristics and services, as well as to save cohorts.
UAB De-Identified Datasets
Dataset Builder in DataLENS
The DataLENS Application includes a Standard Dataset Builder, which allows the creation of detailed clinical datasets in De-Identified (HIPAA Limited Dataset) form. The cohorts, and datasets are controlled and track such that they fall within IRB Exempts requirements.
The DataLENS Application includes a Standard Dataset Builder, which allows the creation of detailed clinical datasets in De-Identified (HIPAA Limited Dataset) form. The cohorts, and datasets are controlled and track such that they fall within IRB Exempts requirements.
UAB Medicine ShareFile
Share files with PHI
ShareFile offers the ability for exchange of PHI or other sensitive data when access outside of the DataLENS application is required. Assistance from developers is available.
Click below to request help via email.
ShareFile offers the ability for exchange of PHI or other sensitive data when access outside of the DataLENS application is required. Assistance from developers is available.
Click below to request help via email.